1. Biopython
Biopython provides a tool kit for writing bioinformatics and computational molecular biology software in Python.
标签:Sequence analysis,Phylogenetics, Population genetics, Protein structures
2. PoPoolation
Toolbox specifically designed for the population genetic analysis of sequence data from pooled individuals.
标签:Population genetics
3. ProbHD
We present a new strategy for identifying heterozygous sites in a single individual by using a machine learning approach that generates a heterozygosity score for each chromosomal position. Our approach also facilitates the identification of regions with unequal representation of two al...
标签:Population genetics, SNP discovery
4. CatchAll
Estimate ecological diversity with both parametric and non-parametric estimators.
标签:Population genetics,Metagenomics
5. PiCall
Identifies short indel polymorphisms in population sequencing data
标签:InDel discovery, Population genetics
6. Gowinda
Gowinda: unbiased analysis of gene set enrichment for Genome Wide Association Studies
标签:Genomics, Genome Wide Association Studies,Population genetics,Population Genomics, High-throughput sequencing
7. BioSmalltalk
BioSmalltalk provides an environment to build bioinformatics scripts and applications using the most powerful object technology as of today, the Smalltalk programming environment
标签:Sequence analysis,Phylogenetics, Population genetics, Protein structures
8. Geneious
Search, organize and analyze genomic and protein information of any size via desktop program that provides publication ready images to enhance the impact of your research.
标签:Phylogenetics, Sequence analysis, De-novo assembly,Genomics, Population genetics,Metagenomics, Structural variation, RNA-Seq,Epigenomics
9. PoPoolation2
PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences. PoPoolation2 requires next generation sequencing data of pooled genomic DNA (Pool-Seq). It may be used for measuring differentiation between populations, f...
标签:Population genetics, Genomics